- Introductory lecture
- Lecture 1: Overview of cell biology
- Lecture 2: Overview of biochemistry
- Lecture 3: Overview of chemical kinetics
- Lecture 4: Simplifying biochemical systems
- Lecture 5: Passive transport
- Lecture 6: Coupling uptake and growth
- Lecture 7: Numerical integration of ordinary differential equations
- Lecture 8: Stiff differential equations
- Lecture 9: Glycerol metabolism, part I
- Lecture 10: Glycerol
metabolism, part II
- xppaut input file for the Hynne and Sørensen (2001) model, as extracted from the SBML model database
- xppaut input file for our glycerol metabolism model

- Lecture 11: Metabolic control analysis of glycerol metabolism
- Lecture 12: Stochastic modeling of a single ion channel
- Lecture 13: The chemical master equation
for
*N*ion channels - Lecture 14: Stochastic theory of reaction kinetics
- Lecture 15: Analyzing stochastic simulations
- Lecture 16: Gene expression and delay-differential equations
- Lecture 17: Modeling the cell cycle, Part I
- Lecture 18: Modeling the cell cycle, Part II
- Lecture 19: Introduction to bifurcations
- Lecture 20: Genetic toggle switches
- Lecture 21: Phase diagrams
- Lecture 22: Somitogenesis and delay-induced oscillations