Computing and Software
Scientific computing
Programming
Other resources
-
Accelrys Draw, a chemical structure drawing program. This
program is free for academics (including students). Contact
information must be provided to download the software.
- ACD/Labs freeware,
including ChemSketch
- ARPACK:
a collection of routines for the iterative solution of large
eigenvalue problems
- Atlas:
automatically tuned BLAS library
- AUTO
- Bardware (Bard
Ermentrout's home page)
- BioModels
Database, a database of models in SMBL
format
- C3.ca
- Chaste (Cancer,
Heart And Soft Tissue Environment): a multiscale simulation
environment for biological systems
- Copasi: a biochemical
systems simulator with many features
- FreeFem++: A
free system for the finite element solution of partial
differential equations
- GAMESS,
a free ab initio chemistry program
- GLPK,
the GNU Linear Programming Kit
- High Performance Computing for
Mac OS X
- IBM Open Visualization Data
Explorer
- LAPACK
-
LASSPTools
- MapleSoft
- MathWorks, makers of Matlab
- Access login
-
Matlab demos and webinars: The demos walk you
through some Matlab operations. The webinars are
typically oriented toward advanced users or specialized
applications.
-
Matlab tutorials: This page mentions the student
version, but there is no real difference between the
student and full version of Matlab. The tutorials
presented here provide an introduction to Matlab and to
some of its features. You will need to register, but
this is free.
- Matlab
- Matrix Template Library
- NCAR Graphics
- Netlib
- Numerical Objects
- Object-Oriented Numerics
resource page
- Octave, a Matlab work-alike
- Sage, a free, general-purpose
mathematical software package
- Scilab
- Scientific
Computing and Imaging Institute Software: a collection of software
written at the University of Utah
-
StatPlus:mac LE, a free statistical analysis package for
the Mac that works with Excel
- TISEAN:
a set of programs for nonlinear time series analysis
- WestGrid
- Bugzilla, a bug-reporting
system for gnome-based software
- CodeWeavers, makers of
CrossOver Office
- Compaq support forum
- Cyberduck, a very powerful
file transfer utility that supports multiple protocols,
available for both Mac and Windows
- Cygwin
- Design Science, makers of
MathType
- Fermi tools: nedit,
plotting software, etc.
- File extensions
- Fink: a system for
grabbing Unix software precompiled for the Mac
- Free Software Foundation
- Gnuplot
- HTML
- Jumpcut, a clipboard
manager for Mac OS X
- k3b: a very nice CD/DVD burning
program
- Linux.org
- LinuxPrinting.org
- Mac OS X free software
directory
- MacPorts: a system for
installing Unix software on the Mac
- Mozilla
- Pine Information Center
- PostScript
- Scientific posters
- Sun Microsystems documentation
- SunHelpDesk
- TeX
- Ubuntu, a standard and very
robust Linux distribution
- WinFIG: An XFig-like
program for Windows
- Xandros, a very professional
(commercial) Linux distribution
- XnView
- XQuartz,
a replacement for the XWindows installation that comes standard
on the Mac